Local Alignment

Submit

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Problem

Print out the results of local alignment. Inout/Output data format use "FASTA". However, the bigger font and 70 characters in FASTA lines.

see also:
* http://en.wikipedia.org/wiki/Sequence_alignment#Global_and_local_alignments
* http://en.wikipedia.org/wiki/Smith-Waterman_algorithm

Options

exec is denied

no deadline, the server will not save your submission

Sample input:_

>SEQUENCE_QUERY_1
ATCG
>SEQUENCE_QUERY_2
ATCG

Sample output:

>SEQUENCE_QUERY_1
ATCG
>SEQUENCE_QUERY_2
ATCG

Sample input:_

>SEQUENCE_QUERY_1
ACACACTA
>SEQUENCE_QUERY_2
AGCACACA

Sample output:

>SEQUENCE_QUERY_1
A-CACACTA
>SEQUENCE_QUERY_2
AGCACAC-A

Sample input:_

>SEQUENCE_QUERY_1
ACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTC
AAGGCCGCCTGGGGTAAGGTCGGCGCGCACGCTGGCGAGTATGGTGCGGAGGCCCTGGAGAGGATGTTCC
>SEQUENCE_QUERY_2
ACTCTTCTGGTCCCCACAGACAAAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTC
AAGGCCGCCTGGGGTAAGGTCGGCGCGAACACGCTGGCGAGTATGGTGCGGAGGCCCTGGAGAGGATGTT

Sample output:

>SEQUENCE_QUERY_1
ACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTC
AAGGCCGCCTGGGGTAAGGTCGGCGCG--CACGCTGGCGAGTATGGTGCGGAGGCCCTGGAGAGGATGTT
CC
>SEQUENCE_QUERY_2
ACTCTTCTGGTCCCCACAGACAAAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTC
AAGGCCGCCTGGGGTAAGGTCGGCGCGAACACGCTGGCGAGTATGGTGCGGAGGCCCTGGAGAGGATGTT
--

Ranking

Python _

Rank	User	Size	Time	Date	Statistics
1	leonid	110	0.0505	2012/07/14 14:10:34	5B / 49B / 48B
2	xulapp	130	0.1902	2011/02/19 11:32:37	0B / 53B / 72B
3	hallvabo	139	0.0907	2010/11/27 08:53:40	0B / 80B / 55B

JavaScript _

Rank	User	Size	Time	Date	Statistics
1	xulapp	104	0.0183	2010/08/01 13:43:59	0B / 43B / 61B
2	murky-satyr	108	0.0071	2010/04/17 14:42:07	0B / 52B / 56B
3	nn	131	0.0038	2010/04/15 00:32:19	0B / 80B / 51B

SNOBOL _

Rank	User	Size	Time	Date	Statistics
1	clock	146	0.0355	2013/03/23 10:05:13	0B / 66B / 47B

Icon _

Rank	User	Size	Time	Date	Statistics
1	clock	138	0.0604	2012/05/06 03:54:53	0B / 64B / 70B

J _

Rank	User	Size	Time	Date	Statistics
1	I., S.(embed)	82	0.0862	2011/12/02 12:21:18	0B / 37B / 36B

C _

Rank	User	Size	Time	Date	Statistics
1	yuyarin	506	0.0280	2010/10/24 01:04:34	0B / 241B / 262B

OCaml _

Rank	User	Size	Time	Date	Statistics
1	m.ukai (embed)	337	0.1416	2010/09/27 17:53:45	0B / 233B / 83B

Haskell _

Rank	User	Size	Time	Date	Statistics
1	rst76	112	0.0026	2010/05/16 20:45:11	0B / 65B / 38B
2	rst76(embed)	112	0.0025	2010/05/16 20:45:50	0B / 65B / 38B

Java _

Rank	User	Size	Time	Date	Statistics
1	hallvabo	254	0.4224	2010/09/17 23:27:35	0B / 171B / 75B

sed _

Rank	User	Size	Time	Date	Statistics
1	clock	48	0.0493	2011/11/29 00:01:23	0B / ?B / ?B
2	nn	49	0.0026	2011/10/01 13:30:10	0B / 21B / 24B
3	GeoJ	52	0.0219	2010/10/23 12:55:16	0B / 19B / 28B

wake _

Rank	User	Size	Time	Date	Statistics
1	clock	66	0.0651	2011/12/13 00:16:22	0B / 17B / 46B

bc _

Rank	User	Size	Time	Date	Statistics
1	McBusLuck	457	0.0433	2020/04/27 19:15:28	0B / 367B / 76B

GolfScript _

Rank	User	Size	Time	Date	Statistics
1	clock	50	0.0848	2012/06/13 23:31:04	0B / 13B / 37B
2	nooodl	71	0.1528	2010/07/21 23:37:40	1B / ?B / ?B

gs2 _

Rank	User	Size	Time	Date	Statistics
1	whio	30	0.3037	2017/04/28 23:45:36	15B / 8B / 6B

z80 _

Rank	User	Size	Time	Date	Statistics
1	yuko	48	0.5006	2010/10/24 19:38:22	27B / 7B / 11B

Vim _

Rank	User	Size	Time	Date	Statistics
1	clock	37	0.3564	2011/12/05 01:13:59	1B / 15B / 17B
2	nn	41	0.0736	2011/12/04 15:04:35	4B / 22B / 12B

Language Ranking_

Rank	Lang	User	Size	Score
1	gs2	whio	30	10000
2	Vim	clock	37	8108
3	z80	yuko	48	6250
4	sed	clock	48	6250
5	GolfScript	clock	50	6000
6	wake	clock	66	4545
7	J	I., S.(embed)	82	3658
8	JavaScript	xulapp	104	2884
9	Python	leonid	110	2727
10	Haskell	rst76	112	2678
11	Icon	clock	138	2173
12	SNOBOL	clock	146	2054
13	Java	hallvabo	254	1181
14	OCaml	m.ukai (embed)	337	890
15	bc	McBusLuck	457	656
16	C	yuyarin	506	592

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